Author

Medhat Mahmoud

Baylor College of Medicine

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Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:whole-genome sequencing· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Research Focus:genome assembly· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Andrew W. CarrolliD· 2 shared Arkarachai FungtammasaniD· 2 shared Chen-Shan ChiniD· 2 shared Fritz Joachim SedlazeckiD· 2 shared Justin M. ZookiD· 2 shared Tobias MarschalliD· 2 shared Aaron M. WengeriD· 1 shared Álvaro Martínez BarrioiD· 1 shared

Activity by Year

2020-2022 · peak 1/yr

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10 top collaborators · 42 mutual co-author links

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2 shared papersGenomics

Andrew W. CarrollORCID

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2 papers

Recent·Most cited

GenomicsCell GenomicsPeer-reviewedApr 28, 2022

Benchmarking challenging small variants with linked and long reads

Justin Wagner, Nathan D. Olson, Lindsay N. Harris…·Justin M. Zook

This paper expands genome benchmarking to include difficult-to-map regions using linked and long reads, identifying more false negatives in variant calling.

205 citationstop 1%

humanwhole-genome sequencing

BioinformaticsbioRxivPreprintJul 1, 2020

Accurate chromosome-scale haplotype-resolved assembly of human genomes

Shilpa Garg, Arkarachai Fungtammasan, Andrew W. Carroll…·Heng Li

This paper introduces a method for chromosome-scale haplotype-resolved genome assembly using long reads and long-range data, achieving high accuracy and contiguity in three human genomes.

28 citations

humanwhole-genome sequencing