MAGScoT - a fast, lightweight, and accurate bin-refinement software
Malte Christoph RühlemanniD, Eike Matthias WackeriD, David EllinghausiD, André FrankeiD
Abstract
We introduce MAGScoT, a fast, lightweight and accurate implementation for the reconstruction of highest-quality metagenome-assembled genomes (MAGs) from the output of multiple genome-binning softwares. MAGScoT outperforms popular bin-refinement solutions in terms of quality and quantity of MAGs as well as computation time and resource consumption. MAGScoT is available via GitHub (https://github.com/ikmb/MAGScoT) and as an easy-to-use Docker container (https://hub.docker.com/repository/docker/ikmb/magscot).
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 0
- Assay
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Binette: a fast and accurate bin refinement tool to construct high quality Metagenome Assembled Genomes.
Jean Mainguy, Claire Hoede·The Journal of Open Source SoftwarePeer-reviewed·Oct 5, 2024
- BinSPreader: refine binning results for fuller MAG reconstruction
Ivan Tolstoganov, Yury Kamenev, … Anton Korobeynikov·iSciencePeer-reviewed·Jul 19, 2022
- MAGNETO: an automated workflow for genome-resolved metagenomics
Benjamin Churcheward, Maxime Millet, … Samuel Chaffron·mSystemsPeer-reviewed·Jun 15, 2022
- Deployable high-fidelity metagenome binning at scale with QuickBin
Brian Bushnell, Juan C. Villada·Communications BiologyPeer-reviewed·Aug 25, 2026
- Enhancing genome recovery across metagenomic samples using MAGmax
Arangasamy Yazhini, Johannes Söding·BioinformaticsPeer-reviewed·Sep 26, 2025
- Automated refinement of metagenomic bins and estimation of binning success using itBins
Julian M. Künkel, Till L. V. Bornemann, … Alexander J. Probst·bioRxiv·Apr 1, 2026