Author

A. E. Dye

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Organism:Arabidopsis· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

I. Carbone· 2 shared J. S. Hoyer· 2 shared S. Duffy· 2 shared A. Munshi· 1 shared C. D. Aimone· 1 shared D. Dubey· 1 shared D. O. Deppong· 1 shared E. Wiese· 1 shared

Activity by Year

2020-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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2 shared papersEvolutionary Biology

I. Carbone

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Author profile →

2 papers

Recent·Most cited

Rapid multilocus adaptation of clonal cabbage leaf curl virus populations to Arabidopsis thaliana

J. S. Hoyer, O. W. Wilkins, A. Munshi, E. Wiese, D. Dubey, S. Renard, K. R. H. Mortensen, A. E. Dye, I. Carbone, S. Duffy, J. T. Ascencio-Ibanez

This study shows rapid adaptation of CabLCV populations in Arabidopsis thaliana through spontaneous mutations and convergent evolution, challenging the assumption of high adaptation.

bioRxiv · Nov 29, 2021Evolutionary Biology

An improved experimental pipeline for preparing circular ssDNA viruses for next-generation sequencing

C. D. Aimone, J. S. Hoyer, A. E. Dye, D. O. Deppong, S. Duffy, I. Carbone, L. Hanley-Bowdoin

The paper presents an optimized protocol for sequencing single-stranded DNA viruses using rolling circle amplification and size selection, achieving at least 50% read mapping to the viral reference genome.

bioRxiv · Sep 30, 2020 · PreprintPlant Biology