Gene expression inference from cell-free DNA using uncertainty-aware deep learning
Robert D. Patton, A. Patrick McDeed, Alexander Netzley, Aditya Pawar, Thomas W. Persse, Akira Nair, Patricia C. Galipeau, Ilsa M. Coleman, Pushpa Itagi, Pooja Chandra, Erolcan Sayar, Mohamed Adil, Manasvita Vashisth, Joseph B. Hiatt, Ruth F. Dumpit, , Gavin Ha
This paper develops a deep learning framework to infer gene expression from cell-free DNA, improving reliability and enabling functional genomics in precision oncology.
bioRxiv · Aug 28, 2026 · PreprintBioinformatics