Author

Alexis Yang

Dana-Farber Cancer Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Chelsea Philpot· 1 shared D. GulhaniD· 1 shared Doris FuiD· 1 shared Garyoung Gary LeeiD· 1 shared Gunsagar Singh GulatiiD· 1 shared Hunter SavignanoiD· 1 shared Jacob E. BerchuckiD· 1 shared M KellisiD· 1 shared

Activity by Year

2025-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperGenomics

Chelsea Philpot

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1 paper

Recent·Most cited

A chromatin fiber model explains cell-free DNA fragmentation signatures of active regulatory elements

Alexis Yang, Garyoung Gary Lee, Surya B. Chhetri, Razane El Hajj Chehade, Gunsagar Singh Gulati, Medha Pandey, Doris Fu, Yoo-Na Kim, Shahabeddin Sotudian, Hunter Savignano, Sadia D. Shahbazi, Chelsea Philpot, Taylor A. Hoggood, D. Gulhan, M Kellis, , Sylvan C. Baca

The paper infers enhancer activity from cfDNA fragmentation patterns and proposes a chromatin fiber model to explain these signatures.

bioRxiv · Nov 6, 2025 · PreprintGenomics