Author

Ali Nemati

Uppsala University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Developmental Biology· 2 Microbiology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Assay:DNA methylation· 1 Organism:E. coli· 1

Frequent Co-Authors

Amir FallahshahroudiiD· 2 shared Cheng Ma· 2 shared Sara Yousefi TaemehiD· 2 shared Sofía Corazza· 2 shared Adeleh Arzhangi· 1 shared Ali DadvariD· 1 shared Ali Sardarzadeh Majd· 1 shared Amiryazdan Taghizadeh Shool· 1 shared

Activity by Year

2026-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersDevelopmental Biology

Amir FallahshahroudiORCID

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3 papers

Recent·Most cited

Developmental remodeling of ping-pong piRNA amplification in the vertebrate female germline

Mohammad H. Ghazimoradi, Ali Nemati, Cheng Ma, Lijing Tang, Sofía Corazza, Sara Yousefi Taemeh, Amir Fallahshahroudi

The paper examines the developmental changes in ping-pong piRNA amplification in the female germline of chickens and zebrafish, showing increased amplification at meiotic entry and preferential targeting of LTR/ERV retroelements in mature ovaries.

bioRxiv · Sep 21, 2026 · PreprintDevelopmental Biology

Cross-Serogroup Analysis of Representative Top-Seven Shiga toxin-producing Escherichia coli Plasmids Reveals Lineage-Specific Patterns

Ali Nemati, Irvin Rivera, Soren Mohammadi, Ali Dadvar, Nima Dehdilani, Sara S. K. Koenig, Adeleh Arzhangi, Anwar A. Kalalah, Ali Sardarzadeh Majd, Amiryazdan Taghizadeh Shool, Ute Römling, Federica Gigliucci, Mark Eppinger

The paper analyzes plasmid sequences from seven STEC serogroups to identify lineage-specific virulence and resistance patterns and mobility features.

bioRxiv · Sep 18, 2026 · PreprintMicrobiology

BMP2 signaling cooperates with retinoic acid to activate a meiotic-entry transcriptional program in chicken primordial germ cells

Mohammad Hossein Ghazimoradi, Sofía Corazza, Ali Nemati, Christina Grozou, Cheng Ma, Mohamad Moustafa Ali, Salar Delavari, Ying Xue, Martin Johnsson, Amir Fallahshahroudi, Sara Yousefi Taemeh

The paper shows that BMP2 and retinoic acid together activate a meiotic-entry program in chicken primordial germ cells, unlike retinoic acid alone.

bioRxiv · Jul 29, 2026 · PreprintDevelopmental Biology