Author

Amanda Kwok

Johns Hopkins University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 1 Assay:CITE-seq· 1 Approach:deep learning· 1 Research Focus:dimensionality reduction· 1 Organism:human· 1 Assay:imaging· 1 Approach:statistical model· 1

Frequent Co-Authors

Adam S. CharlesiD· 1 shared Alejandro Estrada Berlanga· 1 shared Amir Hossein DaraieiD· 1 shared April Yan· 1 shared Beiya Xu· 1 shared Carl HarrisiD· 1 shared Casey Overby TayloriD· 1 shared David KleinfeldiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperBioinformatics

Adam S. CharlesORCID

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2 papers

Recent·Most cited

Longitudinal TCR repertoires in ulcerative colitis patients show features distinguishing disease states

Sabahat Rahman, Beiya Xu, Matthew Farah, Amanda Kwok, Jacob Varghese, Amir Hossein Daraie, Joseph L. Greenstein, Casey Overby Taylor, Nidhi Soley, April Yan, Ishan Vatsaraj, Carl Harris, Joanna Melia, Kristi Briggs

This study analyzes TCR repertoires from ulcerative colitis patients over time, identifying Vβ gene usage and K-mer enrichment differences between flare and remission states.

Inflammatory Bowel Diseases · Mar 13, 2026Peer-reviewedImmunology

Fast and accessible morphology-free functional fluorescence imaging analysis

Alejandro Estrada Berlanga, Gabrielle Kang, Amanda Kwok, Thomas Broggini, Jennifer Lawlor, Kishore V. Kuchibhotla, David Kleinfeld, Gal Mishne, Adam S. Charles

The paper improves the GraFT algorithm for functional calcium imaging by enhancing speed and accessibility through efficient solvers, compressive sensing, and a graphical user interface.

bioRxiv · Apr 15, 2025 · PreprintBioinformatics