Author

Amna Malik

Tulane UniversityPrimary ORCID profile (0000-0003-1790-6899 · 4 papers)Unclaimed ORCID profile · follow to get notified of new preprints

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Same name, identified by ORCID

Amna MalikiD4 papers · Bilkent University

Biology Disciplines

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Genetics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:fungi (other)· 2 Approach:statistical model· 2 Research Focus:gene regulatory network inference· 1 Assay:long-read sequencing· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Arthur J. LustigiD· 2 shared Alexie Smith· 1 shared Alexie Woods· 1 shared Erik K. FlemingtoniD· 1 shared Jeffrey W. CaryiD· 1 shared Jessica M. LohmariD· 1 shared Rose LudeckeiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

7 top collaborators · 13 mutual co-author links

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2 shared papersGenomics

Arthur J. LustigORCID

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2 papers

Recent·Most cited

The Genetic Landscape of Structural Variants in Aspergillus flavus using ONT and PacBio Sequencing

Alexie Woods, Jessica M. Lohmar, Amna Malik, Arthur J. Lustig

This study uses long-read sequencing to analyze structural variants in Aspergillus flavus, identifying homopolymer tracts and deletions that arise spontaneously.

bioRxiv · Oct 11, 2026 · PreprintGenomics

Clustering of Inverted Triplications in Centromeric and Subtelomeric Chromosomal Regions of Aspergillus flavus

Jeffrey W. Cary, Amna Malik, Alexie Smith, Rose Ludecke, Erik K. Flemington, Arthur J. Lustig

This study identifies spontaneous inverted triplications (TRP/INVs) in Aspergillus flavus, showing they form in AT-rich centromeric and subtelomeric regions due to palindromic sequences and replication stress.

bioRxiv · Jan 14, 2025 · PreprintGenetics