Author

Angela Chen

Carnegie Mellon University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Cell Biology· 1 Genetic & Genomic Medicine· 1 Genetics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 4 Assay:bulk RNA-seq· 2 Approach:experimental assay· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1

Frequent Co-Authors

Anat HalevyiD· 2 shared Bhooma ThiruvahindrapuramiD· 2 shared Felix A. RatjeniD· 2 shared Jiafen GongiD· 2 shared Joe WhitneyiD· 2 shared Julie AvolioiD· 2 shared Katherine Keenan· 2 shared Lisa J. StrugiD· 2 shared

Activity by Year

2017-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersGenetics

Anat HalevyORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

spatiAlytica: Viewer-Grounded Multimodal Agentic System for Interactive Spatial Omics Analysis

Arun Das, Kexun Zhang, Jifeng Song, Meiru Han, Angela Chen, Wen Meng, Hugh Galloway, Po-Yuan Chen, Sumin Jo, Zhentao Liu, Md Musaddaqul Hasib, Adam Officer, Harsh Sinha, Yu‐Chiao Chiu, Shou‐Jiang Gao, , Yufei Huang

spatiAlytica enables non-programmer biologists to perform interactive spatial omics analysis using natural language and a viewer-centric agentic system.

bioRxiv · May 4, 2026 · PreprintBioinformatics

High Quality Phasing Using Linked-Read Whole Genome Sequencing of Patient Cohorts Informs Genetic Understanding of Complex Traits

Scott Mastromatteo, Angela Chen, Jiafen Gong, Lin Fan, Bhooma Thiruvahindrapuram, Wilson W. L. Sung, Joe Whitney, Zhuozhi Wang, Rohan V. Patel, Katherine Keenan, Anat Halevy, Naim Panjwani, Julie Avolio, Cheng Wang, Guillaume Côté-Maurais, , Lisa J. Strug

The paper uses linked-read sequencing to phase alleles in 477 CF patients, revealing haplotypes that explain disease mechanisms and contribute to understanding complex traits.

bioRxiv · Mar 28, 2022 · PreprintGenetics

A cystic fibrosis lung disease modifier locus harbors tandem repeats associated with gene expression

Delnaz Roshandel, Scott Mastromatteo, Cheng Wang, Jiafen Gong, Bhooma Thiruvahindrapuram, Wilson W. L. Sung, Zhuozhi Wang, Omar Hamdan, Joe Whitney, Naim Panjwani, Fan Lin, Katherine Keenan, Angela Chen, Mohsen Esmaeili, Anat Halevy, , Lisa J. Strug

The paper identifies VNTRs near SLC9A3 associated with gene expression in CF nasal epithelia and shows their utility in explaining GWAS signals.

medRxiv · Mar 28, 2022 · PreprintGenetic & Genomic Medicine

Accelerated human liver progenitor generation from pluripotent stem cells by inhibiting formation of unwanted lineages

Lay Teng Ang, Antson Kiat Yee Tan, Matias Ilmari Autio, Joanne Su-Hua Goh, Siew Hua Choo, Kian Leong Lee, Jianmin Tan, Bangfen Pan, Jane Jia Hui Lee, Isabelle Kai Xin Yeo, Chloe Jin Yee Wong, Jen Jen Lum, Chet Hong Loh, Ying Yan Lim, Jueween Ling Li Oh, , Bing Lim

This study accelerates the generation of human liver progenitors from pluripotent stem cells by blocking unwanted lineage formation and manipulating temporal signals.

bioRxiv · Aug 10, 2017 · PreprintCell Biology