Author

Bernadette Bracken

New York Genome Center

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Organism:human· 2 Assay:scRNA-seq· 2 Assay:CITE-seq· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Approach:statistical model· 1

Frequent Co-Authors

Andrew ButleriD· 2 shared Rahul SatijaiD· 2 shared Ali RashidfarrokhiiD· 1 shared Bertrand Z. YeungiD· 1 shared Cristina T Rozo· 1 shared Dana E. OrangeiD· 1 shared Efthymia PapalexiiD· 1 shared Eleni P. MimitouiD· 1 shared

Activity by Year

2018-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersGenomics

Andrew ButlerORCID

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2 papers

Recent·Most cited

Characterizing the molecular regulation of inhibitory immune checkpoints with multi-modal single-cell screens

Efthymia Papalexi, Eleni P. Mimitou, Andrew Butler, Samantha D. Foster, Bernadette Bracken, William M. Mauck, Hans‐Hermann Wessels, Yuhan Hao, Bertrand Z. Yeung, Peter Smibert, Rahul Satija

The paper uses multi-modal single-cell screens to identify regulators of PD-L1 expression and develops a computational framework to improve analysis of perturbation data.

Nature Genetics · Mar 1, 2021Peer-reviewedGenomics

Single-Cell RNA-Seq Of Rheumatoid Arthritis Synovial Tissue Using Low Cost Microfluidic Instrumentation

William Stephenson, Laura T. Donlin, Andrew Butler, Cristina T Rozo, Bernadette Bracken, Ali Rashidfarrokhi, Susan M. Goodman, Lionel B. Ivashkiv, Vivian P. Bykerk, Dana E. Orange, Robert B. Darnell, Harold Swerdlow, Rahul Satija

The paper develops a low-cost microfluidic instrument for scRNA-seq and applies it to profile synovial tissue from a rheumatoid arthritis patient, identifying 16 transcriptomic clusters and fibroblast subpopulations.

Nature Communications · Feb 19, 2018Peer-reviewedGenomics