Author

C. Whidden

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 3

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:phylogenetics / evolution· 2 Research Focus:gene regulatory network inference· 1 Approach:graph neural network· 1 Organism:non-human primate· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

A. Gavryushkin· 2 shared A. Messmer· 1 shared C. Breau· 1 shared C. Nugent· 1 shared C.-A. Gillis· 1 shared F. Matsen· 1 shared G. Chaput· 1 shared I. R. Bradbury· 1 shared

Activity by Year

2016-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersEvolutionary Biology

A. Gavryushkin

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3 papers

Recent·Most cited

Ranked Subtree Prune and Regraft

L. Collienne, C. Whidden, A. Gavryushkin

This paper introduces a modified SPR rearrangement for ranked phylogenetic trees and studies its algorithmic properties and implications for time tree inference.

bioRxiv · May 16, 2023Evolutionary Biology

Parallel genomic basis of age at maturity across spatial scales in Atlantic Salmon

T. Kess, S. J. Lehnert, P. Bentzen, S. Duffy, A. Messmer, J. B. Dempson, J. Newport, C. Whidden, M. J. Robertson, G. Chaput, C. Breau, J. April, C.-A. Gillis, M. P. Kent, C. Nugent, I. R. Bradbury

This study investigates the genomic basis of age at maturity in North American Atlantic Salmon, finding both parallel and population-specific genetic patterns.

bioRxiv · Sep 9, 2022 · PreprintEvolutionary Biology

The combinatorics of discrete time-trees: theory and open problems

A. Gavryushkin, C. Whidden, F. Matsen

This paper studies discrete approximations of time-trees, analyzing graph-theoretic properties and proposing open problems for phylogenetic applications.

bioRxiv · Jul 12, 2016Evolutionary Biology