Author

Choulin Chen

Agricultural Genomics Institute at Shenzhen

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2

Signature Assays, Organisms & Methods

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Assay:ATAC-seq· 2 Research Focus:gene regulatory network inference· 2 Organism:Arabidopsis· 1 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Organism:plant (other)· 1

Frequent Co-Authors

Yongzhou Bao· 2 shared Bowen LeiiD· 1 shared Chao Wang· 1 shared Fangjie ZhuiD· 1 shared Hongqiu Cui· 1 shared Huiming LiiD· 1 shared Junyan Qi· 1 shared Lingna Xu· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersGenomics

Yongzhou Bao

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2 papers

Recent·Most cited

Agro-STARR-seq enables in planta genome-wide enhancer discovery and AI-empowerd enhancer design

Yongzhou Bao, Xiwen Zhang, Yanwei Song, Huiming Li, Junyan Qi, Hongqiu Cui, Na Li, Yun Chen, Weigang Zheng, Lingna Xu, Yuanyuan Zhang, Choulin Chen, Fangjie Zhu, Shaoqun Zhou, Zhaohong Li, Yuwen Liu

The paper introduces Agro-STARR-seq, an in planta enhancer screening method, and uses AI to design synthetic enhancers, identifying 14,715 active sequences in Arabidopsis.

bioRxiv · Oct 10, 2025 · PreprintGenomics

Multi-omics analysis reveals critical cis-regulatory roles of transposable elements in livestock genomes

Chao Wang, Bowen Lei, Yongzhou Bao, Zhen Wang, Choulin Chen, Yuanyuan Zhang, Shenghua Qin, Tao Sun, Zhonglin Tang, Yuwen Liu

This study identifies cis-regulatory roles of transposable elements in livestock genomes using multi-omics data and a novel computational framework.

iScience · Feb 18, 2025Peer-reviewedGenomics