BatchRefiner: fast, significant improvement in batch integration of single-cell embeddings with ensemble refinement
Daniel E. Schäffer, Helen Y. Kang, Ekin Deniz Aksu, Daniel Edelman, Bonnie Berger
BatchRefiner improves batch integration of scRNA-seq and scATAC-seq embeddings by ensemble refinement, showing significant performance gains across datasets and metrics.
bioRxiv · Aug 26, 2026 · PreprintBioinformatics