Author

David Baum

German Environment AgencyPrimary ORCID profile (0000-0001-8334-6311 · 4 papers)Unclaimed ORCID profile · follow to get notified of new preprints

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

David BaumiD4 papers · University of Wisconsin–Madison

Biology Disciplines

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Microbiology· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:chromatin & epigenetic regulation· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

Alison Dawn Scott· 1 shared Anne-Kathrin Liebschner· 1 shared Astrid BetheiD· 1 shared Birgit WaltheriD· 1 shared Bret Larget· 1 shared C Förster· 1 shared Cécile Ané· 1 shared Christian BlumenscheitiD· 1 shared

Activity by Year

2015-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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1 shared paperPlant Biology

Alison Dawn Scott

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3 papers

Recent·Most cited

Bridging disciplines towards wastewater-based surveillance of antimicrobial resistance: frequency, local dynamics, and genomic characteristics of carbapenemase-producing Klebsiella pneumoniae

Katharina A. Werner, Vladimir Bajić, Christian Blumenscheit, David Baum, Daniel Desirò, Somayyeh Sedaghatjoo, Jeanette Barthelmes, Anne-Kathrin Liebschner, C Förster, Stephan Fuchs, Silver Anthony Wolf, Astrid Bethe, M. Hölzer, Birgit Walther

This paper develops a workflow for detecting carbapenemase-producing Klebsiella pneumoniae in wastewater using wet-lab methods and genomics, finding high prevalence and specific genetic markers.

bioRxiv · Mar 2, 2026 · PreprintMicrobiology

Statistical Evidence for Common Ancestry: Testing for Signal in Silent Sites

Martin Bontrager, Bret Larget, Cécile Ané, David Baum

The paper develops a statistical test to assess common ancestry by analyzing nucleotide variation at amino acid invariant sites and finds strong evidence supporting common ancestry in primates.

bioRxiv · Jan 4, 2016 · Preprint

Whole genome duplication in coast redwood (Sequoia sempervirens) and its implications for explaining the rarity of polyploidy in conifers

Alison Dawn Scott, Noah Stenz, David Baum

This study investigates polyploidy in coast redwood using transcriptomes and phylogenetic analysis to resolve gene copy relationships and estimate the timing of whole-genome duplication.

bioRxiv · Nov 3, 2015Plant Biology