Author

David Martin

Centre National de la Recherche Scientifique

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Developmental Biology· 1 Genetics· 1 Immunology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Organism:human· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

Alastair Aiken· 1 shared Amelia Liu· 1 shared Anandwardhan A. HardikariD· 1 shared Andrew G. ElefantyiD· 1 shared Andrew Ho· 1 shared Angus Arthur· 1 shared Anne Marie Droste· 1 shared Catherine M Suter· 1 shared

Activity by Year

2016-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 10 mutual co-author links

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Curved chords = mutual co-authorship

1 shared paperGenetics

Alastair Aiken

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

LifeSciBench: Evaluating Language Models on Realistic, Expert-Level Tasks in the Life Sciences

Amelia Liu, Andrew Ho, Anne Marie Droste, David Martin, Edmund Wong, Edward Zhou, Isabelle Zhou, Joshua Park, Joy Jiao, Katie-Rose Skelly, Kenny Kim, Jeremy Li, Kevin Rao, Masatoshi Uehara, Max Marion, , Yunyun Wang

LifeSciBench evaluates language models on 750 expert-authored tasks across seven life science domains and workflows, revealing significant gaps in model performance.

bioRxiv · Aug 22, 2026 · PreprintBioinformatics

A conceptual framework for revealing minor bacterial signals inmicrobiome data through guided data transformation

David Martin, Pierre Houedry, Frederic Derbré, Valérie Monbet

The paper introduces a data transformation method to highlight minor bacterial signals in microbiome data while reducing the influence of dominant bacterial signals on host health predictions.

Methods in Ecology and Evolution · Dec 8, 2025Peer-reviewedMicrobiology

A pro-endocrine pancreatic transcriptional program established during development is retained in human gallbladder epithelial cells

Mugdha V. Joglekar, Subhshri Sahu, Wilson K. M. Wong, Sarang N. Satoor, Charlotte X. Dong, Ryan J. Farr, Michael D. Williams, Prapti Pandya, Gaurang Jhala, Sundy N.Y. Yang, Yi Vee Chew, Nicola A. Hetherington, Dhan Thiruchevlam, Mitnala Sasikala, Guduru Venkat Rao, , Anandwardhan A. Hardikar

The paper shows human gallbladder epithelial cells retain a pro-endocrine pancreatic transcriptional program, enabling insulin production and immune protection in type 1 diabetes.

bioRxiv · Mar 2, 2021 · PreprintDevelopmental Biology

Stromal fibroblast activation and inflammation in frozen shoulder

Moeed Akbar, Michael McLean, Emma Garcia-Melchor, Lindsay AN Crowe, Paul McMillan, Umberto G Fazzi, David Martin, Angus Arthur, James H Reilly, Iain B McInnes, Neal L Millar

This study investigates stromal fibroblast activation and inflammation in frozen shoulder, finding increased expression of activation markers and inflammatory cytokines in diseased tissue.

bioRxiv · Oct 26, 2018 · PreprintImmunology

Grand paternal inheritance of an acquired metabolic trait induced by ancestral obesity is associated with sperm RNA

Jennifer E Cropley, Sally A Eaton, Alastair Aiken, Paul E Young, Eleni Giannoulatou, Joshua WK Ho, Michael E Buckland, Simon P Keam, Gyorgy Hutvagner, David T Humphreys, Katherine G Langley, Darren Henstridge, David Martin, Mark A Febbraio, Catherine M Suter

The paper shows that paternal obesity induces a metabolic phenotype in offspring that persists through multiple generations via sperm RNA changes.

bioRxiv · Mar 10, 2016 · PreprintGenetics