Ultra-fast Prediction of Somatic Structural Variations by Reduced Read Mapping via Pan-Genome k-mer Sets
Jang-il Sohn, Min-Hak Choi, Dohun Yi, A Vipin Menon, Yeon Jeong Kim, Junehawk Lee, Jung Woo Park, Sungkyu Kyung, Seung‐Ho Shin, Byunggook Na, Je‐Gun Joung, Young Seok Ju, Min Sun Yeom, Youngil Koh, Sung‐Soo Yoon, , Jin‐Wu Nam
ETCHING is an ultra-fast somatic structural variation caller that reduces mapping costs and false positives using pan-genome k-mer sets and a Random Forest classifier.
Nature Biomedical Engineering · Dec 19, 2022Peer-reviewedBioinformatics