A Population-level Strain Genotyping Method to Study Pathogen Strain Dynamics in Human Infections
S. J. Morgan, S. L. Durfey, S. Ravishankar, P. Jorth, W. Ni, D. Skerrett, M. L. Aitken, E. F. Mckone, S. Salipante, M. Radey, P. K. Singh
This paper introduces PopMLST, a method to detect strain-level changes in bacterial infections by analyzing PCR-amplified polymorphic loci and next-generation sequencing data.
bioRxiv · Jul 2, 2021Microbiology