Author

Helly Amin

New York City Department of Health and Mental Hygiene

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:virus· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Approach:machine learning (classical)· 1 Research Focus:phylogenetics / evolution· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Michelle SuiD· 2 shared Scott HughesiD· 2 shared Aaron OlseniD· 1 shared Adriano de Bernardi SchneideriD· 1 shared Aine Niamh O’TooleiD· 1 shared Angie S. HinrichsiD· 1 shared Debra A. WadfordiD· 1 shared Emily ScheriD· 1 shared

Activity by Year

2024-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersGenomics

Michelle SuORCID

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2 papers

Recent·Most cited

Genomic Epidemiology of Monkeypox Virus During the 2022 Outbreak in New York City

Saymon Akther, Michelle Su, Jade C. Wang, Helly Amin, Faten Taki, Nelson De La Cruz, Moinuddin A. Chowdhury, Tyler Clabby, Erik J. Kopping, Victoria E. Ruiz, Mindy Leelawong, Julia Latash, Kimberly Johnson, Jennifer Baumgartner, Marcia Wong, , Enoma O. Omoregie

This study analyzes MPXV genomic data from NYC during the 2022 outbreak, identifying NYC-specific lineages and estimating multiple infections, while highlighting gaps in epidemiological-genetic concordance.

bioRxiv · Jul 23, 2024 · PreprintGenomics

SARS-CoV-2 lineage assignments using phylogenetic placement/UShER are superior to pangoLEARN machine learning method

Adriano de Bernardi Schneider, Michelle Su, Angie S. Hinrichs, Jade Wang, Helly Amin, John Bell, Debra A. Wadford, Aine Niamh O’Toole, Emily Scher, Marc D. Perry, Yatish Turakhia, Nicola De Maio, Scott Hughes, Russell B Corbett-Detig

This study compares pangoLEARN and pUShER for SARS-CoV-2 lineage assignment, finding pUShER more stable and accurate across pangolin versions.

Virus Evolution · Jan 1, 2024Peer-reviewedBioinformatics