Author

Ishaan Dureja

Chan Zuckerberg Biohub San Francisco

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Immunology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Assay:metagenomics· 1

Frequent Co-Authors

Bryan Castillo-RojasiD· 2 shared Joseph L. DeRisiiD· 2 shared Karina PerlazaiD· 2 shared Andrew R. LaiiD· 1 shared Arielle L. KlepperiD· 1 shared Carina MarqueziD· 1 shared Diane V. HavliriD· 1 shared Jacquelyn J. MaheriD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersMicrobiology

Bryan Castillo-RojasORCID

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Author profile →

2 papers

Recent·Most cited

Genome-wide within-host evolution during prolonged SARS-CoV-2 infection in a person with advanced HIV infection

Karina Perlaza, Ishaan Dureja, Diane V. Havlir, Vivek Jain, Jeffrey D. Whitman, Monica T. Dayao, Bryan Castillo-Rojas, Julia Rosecrans, Mélanie Ott, Carina Marquez, Joseph L. DeRisi, Taha Y. Taha

The paper tracks SARS-CoV-2 mutations over 90 days in an HIV-positive individual and tests their functional impact on viral entry and replication.

bioRxiv · Oct 8, 2026 · PreprintMicrobiology

Humoral Immune Dysregulation Defines High-Risk Cirrhotic Ascites

Arielle L. Klepper, Matt S. Zinter, Tamara I. A. Roach, Sukhman Sidhu, Zoe Berman, Ishaan Dureja, Ravi Dandekar, Sammer Ganem, Karina Perlaza, Bryan Castillo-Rojas, Kelsey C. Zorn, Jacquelyn J. Maher, Jody L. Baron, Matthew Yocum, Andrew R. Lai, , Joseph L. DeRisi

The paper analyzes human ascites fluid to identify immune dysregulation features associated with poor outcomes in cirrhosis, finding that B cell dysfunction, not microbial translocation, defines high-risk cases.

bioRxiv · Oct 1, 2026 · PreprintImmunology