Author

Ivan Chang

J. Craig Venter Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:machine learning (classical)· 2 Research Focus:software / tool· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1

Frequent Co-Authors

Alessandro SetteiD· 1 shared Alexandra J. Lee· 1 shared Bjoern PetersiD· 1 shared Cecilia S. Lindestam ArlehamniD· 1 shared Chen‐Hsiang KuaniD· 1 shared Christian Fernando Guerrero‐JuareziD· 1 shared Daniela WeiskopfiD· 1 shared Julie G. BureliD· 1 shared

Activity by Year

2017-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Alessandro SetteORCID

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2 papers

Recent·Most cited

Inference and analysis of cell-cell communication using CellChat

Suoqin Jin, Christian Fernando Guerrero‐Juarez, Lihua Zhang, Ivan Chang, Raúl Ramos, Chen‐Hsiang Kuan, Peggy S. Myung, Maksim V. Plikus, Qing Hua Nie

CellChat infers communication probabilities between cell groups using a mass-action model and 2,021 curated ligand-receptor interactions (multimeric complexes, cofactors), then compares signaling networks across scRNA-seq datasets.

Nature Communications · Feb 17, 2021Peer-reviewedBioinformatics✦ In-depth digest

DAFi: A Directed Recursive Filtering and Clustering Approach to Data-Driven Identification of Cell Populations from Polychromatic Flow Cytometry Data

Alexandra J. Lee, Ivan Chang, Julie G. Burel, Cecilia S. Lindestam Arlehamn, Daniela Weiskopf, Bjoern Peters, Alessandro Sette, Richard H. Scheuermann, Qian Yu

DAFi identifies cell populations from flow cytometry data by combining recursive filtering and clustering with user-defined constraints, improving resolution of overlapping and rare populations.

bioRxiv · Sep 26, 2017 · PreprintBioinformatics