Author

J. C. Jimenez

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2 Bioengineering· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Organism:human· 1 Assay:metagenomics· 1 Organism:plant (other)· 1 Research Focus:protein design· 1

Frequent Co-Authors

A. Caughey· 1 shared A. D. Goddard· 1 shared A. Morton· 1 shared B. Pollak· 1 shared C. Bravo· 1 shared C. F. Navas· 1 shared C. Nunez· 1 shared C. Sanhueza· 1 shared

Activity by Year

2017-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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1 shared paperMicrobiology

A. Caughey

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Author profile →

3 papers

Recent·Most cited

Viroscope: plant viral diagnosis from NGS data using biologically-informed genome assembly coverage

S. L. Valenzuela, T. Norambuena, V. Morgante, F. Garcia, J. C. Jimenez, C. Nunez, I. Fuentes, B. Pollak

Viroscope improves viral diagnosis from NGS data by using biologically-informed genome coverage thresholds, achieving sensitive and specific detection across field and synthetic datasets.

bioRxiv · Sep 14, 2022 · PreprintMicrobiology

Deep learning enables the design of functional de novo antimicrobial proteins

J. Caceres-Delpiano, R. Ibanez, P. Alegre, C. Sanhueza, R. Paz, S. Correa, P. Retamal, J. C. Jimenez, L. Alvarez

This paper uses deep learning to design de novo antimicrobial peptides with antifungal activity comparable to wild-type peptides.

bioRxiv · Aug 26, 2020 · PreprintBioengineering

A new sequencing-based women’s health assay combining self-sampling, HPV detection and genotyping, STI detection, and vaginal microbiome analysis

E. M. Bik, S. W. Bird, J. P. Bustamante, L. E. Leon, P. A. Nieto, K. Addae, V. Alegria-Mera, C. Bravo, D. Bravo, J. P. Cardenas, A. Caughey, P. C. Covarrubias, J. Perez-Donoso, G. Gass, S. L. Gupta, , Z. S. Apte

This paper introduces a new sequencing-based women’s health assay that combines self-sampling, HPV detection and genotyping, STI detection, and vaginal microbiome analysis, showing high concordance with existing HPV tests.

bioRxiv · Nov 13, 2017Microbiology