Author

J. McInerney

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 2 Microbiology· 2

Signature Assays, Organisms & Methods

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Research Focus:chromatin & epigenetic regulation· 2 Organism:E. coli· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Approach:comparative / phylogenetic analysis· 1 Research Focus:differential expression· 1 Organism:fungi (other)· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

M. R. Domingo-Sananes· 2 shared A. Beavan· 1 shared A. McNally· 1 shared C. Connor· 1 shared E. Cummins· 1 shared I. Riquelme-Medina· 1 shared R. J. Hall· 1 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

7 top collaborators · 7 mutual co-author links

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2 shared papersEvolutionary Biology

M. R. Domingo-Sananes

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Fungal phylogeny reconstructed using heterogeneous models reveals new placement of Microsporidia

I. Riquelme-Medina, J. McInerney

This study reconstructs fungal phylogeny using heterogeneous models, placing Microsporidia deeply within fungi and Cryptomycota on a sister branch.

bioRxiv · Jun 28, 2023 · PreprintEvolutionary Biology

Contingency, Repeatability and Predictability in the Evolution of a Prokaryotic Pangenome.

A. Beavan, M. R. Domingo-Sananes, J. McInerney

This study uses machine learning to predict gene presence/absence in E. coli pangenomes based on accessory genes, showing predictable evolutionary patterns despite genetic diversity.

bioRxiv · Mar 20, 2023Evolutionary Biology

Pangenome evolution in Escherichia coli is sequence type, not phylogroup, specific

E. Cummins, R. J. Hall, C. Connor, J. McInerney, A. McNally

The paper compares pangenomes of different Escherichia coli sequence types to show that pangenome evolution is influenced by sequence type-specific factors rather than phylogroup relationships.

bioRxiv · May 20, 2022 · PreprintMicrobiology

Selection-based model of prokaryote pangenomes

M. R. Domingo-Sananes, J. McInerney

This paper develops a mathematical model to explore how gene fitness effects and gain/loss rates influence prokaryote pangenome diversity.

bioRxiv · Oct 21, 2019 · PreprintMicrobiology