Author

Jacob Pritt

Johns Hopkins University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 3 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 3 Research Focus:differential expression· 2 Approach:experimental assay· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:deep learning· 1

Frequent Co-Authors

Ben LangmeadiD· 3 shared Abhinav NelloreiD· 1 shared Andrew E Jaffe· 1 shared David Reed· 1 shared James Morton· 1 shared Jeffrey T Leek· 1 shared José Alquicira-Hernández· 1 shared Julie D. CountsiD· 1 shared

Activity by Year

2015-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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3 shared papersBioinformatics

Ben LangmeadORCID

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Author profile →

4 papers

Recent·Most cited

Synchronization of Human Circadian Genes Between in vivo and Cultured Blood Samples

Jacob Pritt, Julie D. Counts, Milton Campbell, David Reed, William E. Kraus

This study shows that culturing blood samples and measuring circadian gene expression correlates more closely with in vivo samples than non-circadian genes, validating a minimally invasive method for circadian analysis.

bioRxiv · Jan 20, 2024 · PreprintGenomics

FORGe: prioritizing variants for graph genomes

Jacob Pritt, Nae-Chyun Chen, Ben Langmead

FORGe prioritizes genetic variants for graph genomes to balance alignment accuracy and computational overhead.

Genome biology · Dec 1, 2018Peer-reviewedBioinformatics

Boiler: Lossy compression of RNA-seq alignments using coverage vectors

Jacob Pritt, Ben Langmead

Boiler compresses RNA-seq alignments by retaining only coverage vectors and empirical distributions, reducing storage while maintaining downstream analysis accuracy.

Nucleic Acids Research · Jun 13, 2016Peer-reviewedBioinformatics

Rail-RNA: Scalable analysis of RNA-seq splicing and coverage

Abhinav Nellore, Leonardo Collado-Torres, Andrew E Jaffe, José Alquicira-Hernández, Jacob Pritt, James Morton, Jeffrey T Leek, Ben Langmead

Rail-RNA efficiently and accurately aligns RNA-seq samples and generates coverage files, enabling population-level analysis of splicing and expression variation.

bioRxiv · Aug 12, 2015Bioinformatics