Author

James Terry

Children's Hospital of Philadelphia

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:dimensionality reduction· 1 Research Focus:gene regulatory network inference· 1 Approach:matrix factorization· 1

Frequent Co-Authors

Benjamin J. SteariD· 2 shared Chris NemarichiD· 2 shared Deanne M. TayloriD· 2 shared J. Alan Simmons· 2 shared Jonathan C. SilversteiniD· 2 shared Taha Mohseni AhooyiiD· 2 shared Adam C. ResnickiD· 1 shared Aditya LahiriiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 42 mutual co-author links

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2 shared papersBioinformatics

Benjamin J. StearORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

MOSAIC: Learning Graph Node Embeddings from Spectrally Isolated Dominant Subspaces of Accumulated Diffusion Operators

Taha Mohseni Ahooyi, Benjamin J. Stear, Yuanchao Zhang, Aditya Lahiri, James Terry, Shiping Zhang, J. Alan Simmons, Ryan Corbett, Patricia Sullivan, Asif Chinwalla, Chris Nemarich, Jo Lynne Rokita, Sharon J. Diskin, Jonathan C. Silverstein, Deanne M. Taylor

MOSAIC learns graph node embeddings by analyzing dominant spectral components of diffusion operators, outperforming existing methods in biomedical graph tasks.

bioRxiv · Oct 6, 2026 · PreprintBioinformatics

The Data Distillery: A Graph Framework for Semantic Integration and Querying of Biomedical Data

Taha Mohseni Ahooyi, Benjamin J. Stear, J. Alan Simmons, Vincent T. Metzger, Praveen Kumar, John Erol Evangelista, Daniel J. B. Clarke, Zhuorui Xie, Hee-Su Kim, Sherry L. Jenkins, Mano Ram Maurya, Srinivasan Ramachandran, Eoin Fahy, Thomas H. Gillespie, Fahim T. Imam, , Deanne M. Taylor

The paper introduces a knowledge graph framework for integrating and querying biomedical data across domains, demonstrating its utility in eight use cases.

bioRxiv · Aug 11, 2025 · PreprintBioinformatics