Author

Jason Ku

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Biology Disciplines

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Bioinformatics· 1

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Research Focus:benchmarking· 1 Approach:contrastive learning· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Research Focus:variant effect prediction· 1

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Katherine S. PollardiD· 1 shared Zhirui HuiD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

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1 shared paperBioinformatics

Katherine S. PollardORCID

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1 paper

Recent·Most cited

Contrastive Regulatory Embeddings Attention Model for Differential Expression Prediction with Personalized Genomes: Insights and Challenges

Zhirui Hu, Jason Ku, Katherine S. Pollard

This paper introduces CREAM, a deep learning model for differential expression prediction using personalized genomes, showing improved performance on training genes but challenges in generalizing to unseen genes.

bioRxiv · Aug 5, 2026 · PreprintBioinformatics