Author

Jesse Gibson

Stanford University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioengineering· 1 Evolutionary Biology· 1 Synthetic Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Assay:ATAC-seq· 1 Organism:bacteria (other)· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Assay:fluorescence / live-cell microscopy· 1

Frequent Co-Authors

Chew ChaiiD· 2 shared Aman PateliD· 1 shared Andrew Z. FireiD· 1 shared Anshul Bharat KundajeiD· 1 shared Anusri PampariiD· 1 shared Bo WangiD· 1 shared Bo WangiD· 1 shared Brennan D. McDonaldiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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2 shared papersEvolutionary Biology

Chew ChaiORCID

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Author profile →

3 papers

Recent·Most cited

Flexible use of conserved motif vocabularies constrains genome access in cell type evolution

Chew Chai, Jesse Gibson, Pengyang Li, Brennan D. McDonald, Anusri Pampari, Aman Patel, Anshul Bharat Kundaje, Bo Wang

The paper shows that conserved motif vocabularies constrain genome access in cell type evolution across species.

Nature Ecology & Evolution · Sep 8, 2026Peer-reviewedEvolutionary Biology

A genetic and microscopy toolkit for live imaging of whole-body regeneration in Macrostomum lignano

Richard Nelson Hall, Hongquan Li, Chew Chai, Sidney Y. Vermeulen, Robin R Bigasin, Eun Sun Song, Souradeep R. Sarkar, Jesse Gibson, Manu Prakash, Andrew Z. Fire, Bo Wang

This paper develops a toolkit for live imaging of whole-body regeneration in flatworms, revealing neuron regenerative limitations and independent nerve cord reconnection.

Cell Reports · Oct 19, 2024Peer-reviewedBioengineering

Feedforward ribosome control mitigates gene activation burden

Carlos Barajas, Hsin-Ho Huang, Jesse Gibson, Luis Sandoval, Domitilla Del Vecchio

This paper introduces a feedforward controller that compensates for growth rate defects caused by heterologous gene activation in bacteria.

Nature Communications · Nov 17, 2022Peer-reviewedSynthetic Biology