Author

Jiaming Kong

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 4

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 3 Organism:human· 3 Assay:scRNA-seq· 3 Approach:statistical model· 3 Approach:deep learning· 2 Research Focus:differential expression· 2 Approach:transformer / foundation model· 2 Assay:ATAC-seq· 1

Frequent Co-Authors

Luyi TianiD· 4 shared Yunlin FuiD· 4 shared Yue YouiD· 3 shared 李光鹏· 3 shared Shihong LuiD· 2 shared Shuangjia ZhengiD· 2 shared Wenle ReniD· 2 shared Xiaodong Liu· 2 shared

Activity by Year

2026-2026 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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4 shared papersBioinformatics

Luyi TianORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

A Systematic Comparison of Single-Cell Perturbation Response Prediction Models

Lanxiang Li, Yue You, Yunlin Fu, Wenyu Liao, Xueying Fan, Shihong Lu, Ye Cao, Bo Li, Wenle Ren, Jiaming Kong, Shuangjia Zheng, Jizheng Chen, Xiaodong Liu, Luyi Tian

The paper benchmarks 13 models for predicting single-cell perturbation responses across 25 datasets, finding performance varies with perturbation effect size and evaluation metric.

Science Advances · Sep 9, 2026Peer-reviewedBioinformatics

Virtual-cell verification enables self-auditing AI discovery for immune rejuvenation

Yue You, Xueying Fan, 李光鹏, Wenchan Deng, Yunlin Fu, Huimin Hu, Wenle Ren, Shihong Lu, Guobin Han, Jian Shao, Shuangjia Zheng, Kaixin Zhou, Jiaming Kong, Jinzheng Chen, Xiaodong Liu, Luyi Tian

The paper introduces a framework for self-auditing AI in drug discovery, using verifiers to validate predictions and adjust objectives based on experimental results.

bioRxiv · Aug 11, 2026 · PreprintBioinformatics

A disease dynamics atlas forecasts patient states and maps molecular programs in ALS

Zizhang Li, Chong Gao, Jiaming Kong, Yuting Fu, Shan Wen, 李光鹏, Ye Cao, Yunlin Fu, Hao Zhang, Shikai Jia, Xiaojing Liu, Jiangli Yang, Lei Cai, Feng Yan, Xiaodong Liu, Luyi Tian

The paper develops DynaALS, a disease dynamics atlas for ALS that maps patient states and molecular programs using longitudinal medical records and multi-omics data.

bioRxiv · Aug 11, 2026 · PreprintBioinformatics

RVQ-Alpha: Bridging Single-Cell Transcriptomics and Large Language Models via Hierarchical Discrete Tokenization and Fact-Aware Reinforcement Learning

李光鹏, Yue You, Yunlin Fu, Weige Zhou, Feng Tang, Jiaming Kong, Luyi Tian

RVQ-Alpha adapts large language models for single-cell analysis by integrating hierarchical tokenization and reinforcement learning, achieving performance comparable to task-specific models on a multi-task benchmark.

bioRxiv · Aug 6, 2026 · PreprintBioinformatics