Transkingdom Network Analysis (TkNA): a systems approach inferring causal factors underlying host-microbiota interactions.
Nolan K. Newman, Matthew S Macovsky, Richard Rosario Rodrigues, Amanda M. Bruce, Jacob W. Pederson, Jyothi Padiadpu, Jigui Shan, Joshua Williams, Sankalp S Patil, Amiran Dzutsev, Natalia Shulzhenko, Giorgio Trinchieri, Kevin Brown, Andrey Morgun
The paper introduces TkNA, a causal-inference framework for analyzing host-microbiota multi-omics data to identify master regulators of interactions.
Nature Protocols · Mar 12, 2024Peer-reviewedSystems Biology