Author

Jon Nguyen

Stanford Medicine

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Genetic & Genomic Medicine· 1

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Assay:ATAC-seq· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Organism:human· 1 Assay:long-read sequencing· 1 Approach:simulation· 1

Frequent Co-Authors

Chloe M. ReuteriD· 1 shared Devon E. BonneriD· 1 shared Euan Angus AshleyiD· 1 shared Jonathan Adam BernsteiniD· 1 shared Matthew Thomas WheeleriD· 1 shared Rhina Kaur· 1 shared Stephen B. MontgomeryiD· 1 shared Tanner D. JenseniD· 1 shared

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2026-2026 · peak 1/yr

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1 shared paperGenetic & Genomic Medicine

Chloe M. ReuterORCID

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1 paper

Recent·Most cited

Population-scale detection of methylation outliers from long-read genome sequencing

Tanner D. Jensen, Rhina Kaur, Devon E. Bonner, Jon Nguyen, Chloe M. Reuter, Euan Angus Ashley, Jonathan Adam Bernstein, Matthew Thomas Wheeler, Stephen B. Montgomery

METAFORA calls depth-aware, covariate-adjusted methylation outlier regions from PacBio and Nanopore long reads; in 551 rare-disease genomes, outliers tracked structural variants, repeat expansions, and imprinting defects.

medRxiv · Jun 11, 2026 · PreprintGenetic & Genomic Medicine✦ In-depth digest