Author

Jon Pey

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 4 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Organism:human· 2 Assay:spatial transcriptomics· 2 Research Focus:benchmarking· 1 Research Focus:deconvolution· 1

Frequent Co-Authors

Asier AntoranziD· 5 shared Francesca Maria BosisioiD· 3 shared Frederik De SmetiD· 3 shared Pouya NazariiD· 3 shared Alexandre ArnouldiD· 2 shared Bart De MooriD· 2 shared Madhavi Dipak AndhariiD· 2 shared María Ortiz· 2 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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5 shared papersBioinformatics

Asier AntoranzORCID

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Author profile →

5 papers

Recent·Most cited

Longitudinal tumor ecosystem mapping defines glioblastoma treatment trajectories

Maxime Vanmechelen, Pouya Nazari, Jan C. Beckervordersandforth, Chiara Caprioli, Daphne J. G. Leunissen, Basiel Cole, Carmen Bravo González‐Blas, Brecht Decraene, Yanti De Visser, G Shankar, Maikel Verduin, daniele Pantano, Sien Bevers, Tom Moors, Shanna Zielinski, , Frederik De Smet

This study maps glioblastoma tumor ecosystems over time using spatial single-cell profiling to identify prognostic subgroups and treatment responses.

bioRxiv · Mar 7, 2026 · PreprintCancer Biology

CONCLAVE: CONsensus CLustering with Annotation-Validation Extrapolation for cyclic multiplexed immunofluorescence data

Pouya Nazari, Alexandre Arnould, Madhavi Dipak Andhari, Maite Fontecha, Jorge Martín Hernández, Bart De Moor, Jon Pey, Frederik De Smet, Francesca Maria Bosisio, Asier Antoranz

CONCLAVE improves cell annotation in cyclic multiplexed immunofluorescence data by using consensus clustering and validation, enhancing accuracy and reproducibility.

bioRxiv · Nov 13, 2025 · PreprintBioinformatics

COLLAGE: COnsensus aLignment of muLtiplexing imAGEs

Asier Antoranz, Alexandre Arnould, Madhavi Dipak Andhari, Pouya Nazari, Gautam Shankar, Bart De Moor, Frederik De Smet, Francesca Maria Bosisio, Jon Pey

COLLAGE improves image alignment for multiplexed immunohistochemistry by breaking alignment into smaller puzzles, enabling parallel processing and reducing errors.

bioRxiv · Jul 15, 2024 · PreprintBioinformatics

ELITE: Expression deconvoLution using lInear optimizaTion in bulk transcriptomics mixturEs

Asier Antoranz, Carlos Mackintosh, María Ortiz, Jon Pey

ELITE deconvolves bulk transcriptomic data using linear programming to estimate cell type composition, outperforming existing methods in cases with similar expression profiles.

bioRxiv · Mar 6, 2023 · PreprintBioinformatics

ELIMINATOR: Essentiality anaLysIs using MultIsystem Networks And inTeger prOgRamming

Asier Antoranz, María Ortiz, Jon Pey

The paper introduces an in-silico method to identify patient-specific essential genes using constraint-based modeling and validates it against experimental data from cancer cell lines.

BMC Bioinformatics · Aug 6, 2022Peer-reviewedBioinformatics