Author

Jonas Hirsch

Biotechnologisches Zentrum

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Bioinformatics· 1 Genomics· 1

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Research Focus:benchmarking· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Anna R. PoetschiD· 2 shared Melissa SanabriaiD· 2 shared

Activity by Year

2023-2024 · peak 1/yr

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2 top collaborators · 1 mutual co-author link

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2 shared papersBioinformatics

Anna R. PoetschORCID

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2 papers

Recent·Most cited

Distinguishing word identity and sequence context in DNA language models

Melissa Sanabria, Jonas Hirsch, Anna R. Poetsch

The paper evaluates DNA language models by assessing their ability to distinguish sequence context from token identity, finding that overlapping k-mer tokenization limits context learning.

BMC Bioinformatics · Sep 13, 2024Peer-reviewedBioinformatics

The human genome's vocabulary as proposed by the DNA language model GROVER

Melissa Sanabria, Jonas Hirsch, Anna R. Poetsch

This paper introduces GROVER, a DNA language model trained on the human genome to generate a dictionary of tokens and analyze genomic sequence context and functional annotations.

bioRxiv · Jul 19, 2023 · PreprintGenomics