Author

Jorge Lopez-Nava

National Cancer Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genetic & Genomic Medicine· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Bishwanath ChatterjeeiD· 2 shared Frederic G. BarriD· 2 shared Wenyue SuniD· 2 shared Anika R. Kakarla· 1 shared Benjamin D. SunkeliD· 1 shared Benjamin Z. StantoniD· 1 shared Corinne Mary LinardiciD· 1 shared Erin R. RudzinskiiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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2 shared papersGenetic & Genomic Medicine

Bishwanath ChatterjeeORCID

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2 papers

Recent·Most cited

DNA methylation profiling reveals novel rhabdomyosarcoma subsets with distinct histologic, genetic and clinical properties

Wenyue Sun, Jorge Lopez-Nava, Jack F. Shern, Erin R. Rudzinski, Michael Arnold, Lea F. Surrey, Monisha Raju, Anika R. Kakarla, Bishwanath Chatterjee, Corinne Mary Linardic, Philip J. Lupo, Frederic G. Barr

The paper uses DNA methylation profiling to identify distinct subsets within rhabdomyosarcoma subtypes, revealing clinical and genetic differences among them.

medRxiv · Oct 22, 2026 · PreprintGenetic & Genomic Medicine

Fusion transcription factor dosage controls cell state in rhabdomyosarcoma

Rachel A. Hoffman, Meng Wang, Benjamin D. Sunkel, Thanh Hung Nguyen, Jorge Lopez-Nava, Bishwanath Chatterjee, Wenyue Sun, Frederic G. Barr, Benjamin Z. Stanton

This study shows that varying levels of PAX3::FOXO1 protein affect cell state and epigenetic heterogeneity in rhabdomyosarcoma.

bioRxiv · May 16, 2025 · PreprintGenomics