High-throughput bacterial aggregation analysis in droplets
Merili Saar-Abroi, Karoliine Lindpere, Daniel Kacsor, Triini Olman, David Gonzalez, Fenella Lucia Sulp, Katri Kiir, Immanuel Sanka, Simona Bartkova, Ott Scheler
This paper develops an open-source image analysis pipeline using texture-based methods to assess bacterial aggregation in microfluidic droplets, achieving high accuracy and broad applicability.
Scientific Reports · Dec 2, 2025Peer-reviewedBioinformatics