Author

Keith Baggerly

The University of Texas MD Anderson Cancer Center

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Organism:human· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Ashish M. KamatiD· 1 shared Bogdan A. CzerniakiD· 1 shared Bradley McIntosh BroomiD· 1 shared Charles Chuanhai GuoiD· 1 shared Colin P. DinneyiD· 1 shared David E. Cogdell· 1 shared David G. MenteriD· 1 shared David James McConkeyiD· 1 shared

Activity by Year

2019-2019 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperGenomics

Ashish M. KamatORCID

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2 papers

Recent·Most cited

Dysregulation of EMT Drives the Progression to Clinically Aggressive Sarcomatoid Bladder Cancer

Charles Chuanhai Guo, Tadeusz Majewski, Li Zhang, Hui Yao, Jolanta E. Bondaruk, Yan Wang, Shizhen Zhang, Ziqiao Wang, June Goo Lee, Sangkyou Lee, David E. Cogdell, Miao Zhang, Peng Wei, H. Barton Grossman, Ashish M. Kamat, , Bogdan A. Czerniak

This study identifies distinct genomic and molecular features of sarcomatoid bladder cancer, linking EMT dysregulation to aggressive behavior and immune infiltration.

Cell Reports · May 1, 2019Peer-reviewedGenomics

Gene-specific methylation profiles for integrative methylation-expression analysis in cancer research

Yusha Katie Liu, Keith Baggerly, Elias Orouji, Ganiraju C. Manyam, Huiqin Chen, Michael S. Lam, Jennifer Sarah Davis, Michael S. Lee, Bradley McIntosh Broom, David G. Menter, Kunal Rai, Scott Kopetz, Jeffrey S. Morris

The paper introduces a method to construct gene-specific methylation profiles for integrative methylation-expression analysis in cancer, showing improved explanation of expression variability and identification of methylation differences across cancer subtypes.

bioRxiv · Apr 24, 2019 · PreprintGenomics