Author

Kim Rasmussen

Los Alamos National Laboratory

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:DNA methylation· 2 Research Focus:gene regulatory network inference· 2 Assay:whole-genome sequencing· 2 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:diffusion model· 1 Organism:human· 1 Approach:statistical model· 1

Frequent Co-Authors

A. R. BishopiD· 2 shared Amarda ShehuiD· 2 shared Anny UshevaiD· 2 shared Anowarul KabiriD· 2 shared Boian S. AlexandroviD· 2 shared Manish BhattaraiiD· 2 shared Toki Tahmid InaniD· 2 shared

Activity by Year

2024-2024 · peak 2/yr

Co-Author Collaboration Network

7 top collaborators · 21 mutual co-author links

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2 shared papersGenomics

A. R. BishopORCID

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2 papers

Recent·Most cited

Scalable DNA Feature Generation and Transcription Factor Binding Prediction via Deep Surrogate Models

Anowarul Kabir, Toki Tahmid Inan, Kim Rasmussen, Amarda Shehu, Anny Usheva, A. R. Bishop, Boian S. Alexandrov, Manish Bhattarai

The paper develops a deep surrogate model to generate DNA breathing features efficiently, improving transcription factor binding predictions.

bioRxiv · Dec 6, 2024 · PreprintGenomics

Efficient High-Throughput DNA Breathing Features Generation Using Jax-EPBD

Toki Tahmid Inan, Anowarul Kabir, Kim Rasmussen, Amarda Shehu, Anny Usheva, A. R. Bishop, Boian S. Alexandrov, Manish Bhattarai

The paper introduces JAX-EPBD, a high-throughput framework for simulating DNA breathing dynamics, showing 30x speedup and improved predictions of transcription factor binding using SELEX datasets.

bioRxiv · Dec 6, 2024 · PreprintBioinformatics