Author

Kristopher Irizarry

Oregon State University

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Biology Disciplines

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Bioinformatics· 1

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Approach:contrastive learning· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1 Assay:metagenomics· 1 Research Focus:protein structure prediction· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Andrew R. ThurberiD· 1 shared Jacob H. WynneiD· 1 shared Maude M. DavidiD· 1 shared Nima Azbijari· 1 shared Tanush Sistla· 1 shared

Activity by Year

2026-2026 · peak 1/yr

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1 shared paperBioinformatics

Andrew R. ThurberORCID

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1 paper

Recent·Most cited

Metagenomic contextualization of proteins with state space models

Nima Azbijari, Jacob H. Wynne, Kristopher Irizarry, Tanush Sistla, Andrew R. Thurber, Maude M. David

This paper introduces Nammu, a state-space model for metagenomic data that outperforms Transformer-based models in taxonomic and functional predictions.

bioRxiv · Jul 11, 2026 · PreprintBioinformatics