Author

Lin Qiu

University of WashingtonPrimary ORCID profile (0009-0007-2419-7281 · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints

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Same name, identified by ORCID

Lin QiuiD1 paper · Chinese Academy of Sciences

Biology Disciplines

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Bioinformatics· 2 Bioengineering· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Organism:human· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Assay:CRISPR screen· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1

Frequent Co-Authors

Aviv RegeviD· 3 shared Kexin HuangiD· 3 shared Di YiniD· 2 shared Hanchen WangiD· 2 shared Jure LeskoveciD· 2 shared Le CongiD· 2 shared Yuanhao QuiD· 2 shared Alexander P. WuiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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3 shared papersBioinformatics

Aviv RegevORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

AutoScreen: AI Co-Scientist System for Target Discovery in Functional Genomics

Yuanhao Qu, Xufeng Liu, Xiaotong Wang, Meitong Chen, Xiao Luo, Luna Lyu, Ming Yin, Jingwen Hui, Di Yin, Ravi K. Dinesh, Lin Qiu, Kexin Huang, Hanchen Wang, Shangyuan Tong, Henry C. Cousins, , Le Cong

AutoScreen improves gene prioritization in functional genomics by integrating AI agents for pre-screen design and post-screen analysis, achieving higher hit recovery and precision than existing methods.

bioRxiv · Sep 10, 2026 · PreprintBioengineering

Gene-embedding-based prediction and functional evaluation of perturbation expression responses with PRESAGE

Russell Littman, Jacob Levine, Sepideh Maleki, Yong‐Ju Lee, V. Yu. Ermakov, Lin Qiu, Alexander P. Wu, Kexin Huang, Romain Lopez, Gabriele Scalia, Tommaso Biancalani, David Richmond, Aviv Regev, Jan-Christian Hütter

PRESAGE predicts perturbation expression responses using gene embeddings and outperforms existing methods in functional evaluations.

bioRxiv · Jun 3, 2025 · PreprintBioinformatics

Biomni: A General-Purpose Biomedical AI Agent

Kexin Huang, Serena Zhang, Hanchen Wang, Yuanhao Qu, Yingzhou Lu, Yusuf Roohani, Ryan J. Li, Lin Qiu, G. L. Li, Junze Zhang, Di Yin, Shruti Marwaha, Jennefer N. Carter, Xin Zhou, Matthew Thomas Wheeler, , Jure Leskovec

An LLM agent with a literature-mined environment of 150 tools, 105 packages and 59 databases plans in code, matching reported human accuracy on database and sequence question answering.

bioRxiv · May 30, 2025 · PreprintBioinformatics✦ In-depth digest