Author

Mark Pratt

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Andrew Bernier· 1 shared April Jung· 1 shared Bharathi Gandi· 1 shared Brendan S. Blumenstiel· 1 shared Corey NoletiD· 1 shared Dan Mazur· 1 shared Desu CheniD· 1 shared Doron LipsoniD· 1 shared

Activity by Year

2016-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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1 shared paperGenomics

Andrew Bernier

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2 papers

Recent·Most cited

Cost-efficient whole genome-sequencing using novel mostly natural sequencing-by-synthesis chemistry and open fluidics platform

Gilad Almogy, Mark Pratt, Florian C. Oberstrass, Linda Lee, Dan Mazur, Nate Beckett, Omer Barad, Ilya Soifer, Eddie Perelman, Yoav Etzioni, Martin Sosa, April Jung, Tyson A. Clark, Eliane H. Trepagnier, Gila Lithwick‐Yanai, , Doron Lipson

Open flow cell on a circular wafer with mostly natural nucleotides and no reversible terminators: about 300 bp reads at $1/Gb, 99.6% SNP accuracy on reference human genomes.

bioRxiv · May 29, 2022 · PreprintGenomics

svclassify: a method to establish benchmark structural variant calls

Hemang Parikh, Marghoob Mohiyuddin, Hugo Y. K. Lam, Hariharan Iyer, Desu Chen, Mark Pratt, Gabor Bartha, Noah Spies, Wolfgang Losert, Justin M. Zook, Marc L. Salit

svclassify classifies structural variants as true or false positives using multi-technology annotations, achieving high concordance with PCR validation and MetaSV.

BMC Genomics · Jan 16, 2016Peer-reviewedGenomics