Author

Matt Tranzillo

Tatta Bio

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Biology Disciplines

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Microbiology· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:contrastive learning· 1 Approach:deep learning· 1 Assay:DNA methylation· 1 Assay:metagenomics· 1 Research Focus:protein structure prediction· 1

Frequent Co-Authors

Andre CornmaniD· 2 shared Nicolo G. Zulaybar· 2 shared Yunha HwangiD· 2 shared Imane Bouzit· 1 shared Rachel Silverstein· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

5 top collaborators · 9 mutual co-author links

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2 shared papersMicrobiology

Andre CornmanORCID

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2 papers

Recent·Most cited

Discovery of microbial intergenic features with genomic language modeling and multimodal search

Nicolo G. Zulaybar, Matt Tranzillo, Rachel Silverstein, Yunha Hwang, Andre Cornman

The paper identifies microbial intergenic features using a sparse autoencoder and multimodal search, revealing previously uncharacterized regulatory DNA and structured RNA elements.

bioRxiv · Sep 17, 2026 · PreprintMicrobiology

Linear-time prediction of proteome-scale microbial protein interactions

Andre Cornman, Matt Tranzillo, Nicolo G. Zulaybar, Imane Bouzit, Yunha Hwang

FlashPPI predicts proteome-scale microbial protein interactions in linear time using contrastive learning and genomic language models, outperforming existing methods and enabling rapid network analysis.

Proceedings of the National Academy of Sciences · Jun 17, 2026Peer-reviewedMolecular Biology