Author

Mrinal

Indraprastha Institute of Information Technology Delhi

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Assay:protein structure· 1 Assay:proteomics· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Arjun RayiD· 3 shared Sukriti SacheriD· 3 shared Atul AtuliD· 2 shared Prutyay Gautam· 2 shared Abel Xavier Francis· 1 shared Akash Kumar Bhaskar· 1 shared Mansi Chilkoti· 1 shared Parth Garg· 1 shared

Activity by Year

2022-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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3 shared papersBioinformatics

Arjun RayORCID

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3 papers

Recent·Most cited

An algorithm-based investigation reveals the differential dynamics of water inside protein cavity as a function of distance from its wall

Abel Xavier Francis, Mansi Chilkoti, Atul Atul, Mrinal, Sukriti Sacher, Arjun Ray

The paper develops a tool to analyze water dynamics inside protein cavities using MD simulations, showing its ability to distinguish cavity water from bulk solvent and characterize its dynamic properties.

bioRxiv · Nov 6, 2024 · PreprintBioinformatics

DIGEST: An online tool for designing of multiple reaction monitoring assays

Prutyay Gautam, Praveen Singh, Mrinal, Akash Kumar Bhaskar, Sukriti Sacher, Yashesh Dagar, Trayambak Basak, Shantanu Sengupta, Arjun Ray

DIGEST is a web tool that designs MRM transitions for proteomics by predicting peptide fragmentation patterns and selecting optimal ion pairs to improve assay specificity and reduce experimental time.

bioRxiv · Nov 27, 2023 · PreprintBioinformatics

CICLOP: A Robust, Faster, and Accurate Computational Framework for Protein Inner Cavity Detection

Parth Garg, Sukriti Sacher, Mrinal, Atul Atul, Prutyay Gautam, Arjun Ray

CICLOP detects protein inner cavities with high accuracy, providing residue details, cavity dimensions, and physicochemical properties for functional analysis.

Bioinformatics · Feb 1, 2022Peer-reviewedBioinformatics