Author

Nasser Hashemi

Boston University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Assay:protein sequence· 2 Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Assay:protein structure· 1 Research Focus:protein structure prediction· 1 Approach:statistical model· 1

Frequent Co-Authors

Dima KozakoviD· 2 shared Sándor VajdaiD· 2 shared Akhil Jindal· 1 shared Boran HaoiD· 1 shared Dzmitry PadhornyiD· 1 shared George S. JonesiD· 1 shared Ioannis Ch. PaschalidisiD· 1 shared Israel DestaiD· 1 shared

Activity by Year

2021-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersMolecular Biology

Dima KozakovORCID

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2 papers

Recent·Most cited

Improved Predictions Of MHC-Peptide Binding Using Protein Language Models

Nasser Hashemi, Boran Hao, Mikhail Ignatov, Ioannis Ch. Paschalidis, Pirooz Vakili, Sándor Vajda, Dima Kozakov

The paper fine-tunes protein language models on peptide-MHC sequences to predict MHC-peptide binding, outperforming the existing NetMHCpan4.1 method.

Frontiers in Bioinformatics · Aug 17, 2023Peer-reviewedMolecular Biology

Improved Docking of Protein Models by a Combination of Alphafold2 and ClusPro

Usman Ghani, Israel Desta, Akhil Jindal, Omeir Khan, George S. Jones, Nasser Hashemi, Sergey Kotelnikov, Dzmitry Padhorny, Sándor Vajda, Dima Kozakov

Splitting AlphaFold2 complex models, re-docking with ClusPro, AlphaFold2 refinement and predicted-aligned-error ranking raised successful docking-benchmark targets from 88 (five AlphaFold2 models) to 123 (top 10) of 204.

bioRxiv · Sep 7, 2021 · PreprintBioinformatics✦ In-depth digest