EpiFusion: Joint inference of the effective reproduction number by integrating phylodynamic and epidemiological modelling with particle filtering
C. Judge, T. Vaughan, T. Russell, S. Abbott, L. du Plessis, T. Stadler, O. Brady, S. Hill
EpiFusion improves estimation of outbreak dynamics by integrating phylodynamic and epidemiological data using particle filtering, enhancing accuracy and efficiency in large, poorly sampled epidemics.
bioRxiv · Dec 18, 2023Evolutionary Biology