Author

Patrick Nicodemus

University of Pennsylvania

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Organism:C. elegans· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:deconvolution· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Pablo G. CámaraiD· 2 shared Andrea F. Edwards-Cintron· 1 shared Elijah GuntheriD· 1 shared Javier MontelongoiD· 1 shared Kristi Zoga· 1 shared Michael P. HartiD· 1 shared Pranav Thokachichu· 1 shared Rachael G. AubiniD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersNeuroscience

Pablo G. CámaraORCID

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2 papers

Recent·Most cited

Multiple autism genes influence GABA neuron remodeling via distinct developmental trajectories

Kristi Zoga, Sophia Villiere, Vina Tikiyani, Andrea F. Edwards-Cintron, Pranav Thokachichu, Patrick Nicodemus, Pablo G. Cámara, Michael P. Hart

This paper screens autism-associated genes in C. elegans to identify their impact on GABA neuron remodeling and behavior, revealing distinct developmental trajectories and new molecular mechanisms.

Genetics · Aug 9, 2025Peer-reviewedNeuroscience

Clustering-independent estimation of cell abundances in bulk tissues using single-cell RNA-seq data

Rachael G. Aubin, Javier Montelongo, Robert Hu, Elijah Gunther, Patrick Nicodemus, Pablo G. Cámara

The paper introduces ConDecon, a clustering-independent method to estimate cell abundances in bulk tissues using single-cell RNA-seq data, and applies it to study neurodegenerative microglia pathways in pediatric ependymoma.

Cell Reports Methods · Nov 1, 2024Peer-reviewedBioinformatics