Author

Peng Ye

Shanghai Artificial Intelligence Laboratory

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Biology Disciplines

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Bioinformatics· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Assay:proteomics· 2 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Assay:DNA methylation· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Anne Barasa· 1 shared Banghao WuiD· 1 shared Bozitao ZhongiD· 1 shared Charles WardeniD· 1 shared David H Mulama· 1 shared Hanjun QiniD· 1 shared Javier Gordon Ogembo· 1 shared Jiabei ChengiD· 1 shared

Activity by Year

2018-2025 · peak 1/yr

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10 top collaborators · 24 mutual co-author links

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1 shared paperImmunology

Anne Barasa

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2 papers

Recent·Most cited

Harnessing A Unified Multi-modal SequenceModeling to unveil Protein-DNA Interdependency

Mingchen Li, Yuchen Ren, Peng Ye, Jiabei Cheng, Xinzhu Ma, Yuchen Cai, Wanli Ouyang, Bozitao Zhong, Banghao Wu, Nanqing Dong, Liang Hong, Pan Tan

ProDMM is a multimodal sequence modeling framework that captures interdependencies between protein motifs, coding DNA, and regulatory elements to predict phenotypes and generate optimized regulatory sequences.

bioRxiv · Feb 26, 2025 · PreprintBioinformatics

Identification of a Novel Neutralizing and Two Non-Neutralizing Epitopes on Epstein-Barr Virus gp350 Protein

Lorraine Z Mutsvunguma, Anne Barasa, Charles Warden, Joslyn Foley, Murali Muniraju, David H Mulama, Peng Ye, Hanjun Qin, Jinhui Wang, Xiwei Wu, Waithaka Mwangi, Javier Gordon Ogembo

This study identifies nine epitopes on EBV gp350, including two novel neutralizing epitopes, through monoclonal antibody analysis and epitope mapping.

bioRxiv · Apr 17, 2018 · PreprintImmunology