Author

Peter F Stadler

Friedrich Schiller University Jena

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Approach:deep learning· 2 Research Focus:gene regulatory network inference· 2 Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Organism:human· 1

Frequent Co-Authors

Dominik Luntzer· 1 shared Frank Jühling· 1 shared Helene KretzmeriD· 1 shared Ivo L Hofacker· 1 shared Manja MarziD· 1 shared Michael T. WolfingeriD· 1 shared Ronny LorenziD· 1 shared Sandra TriebeliD· 1 shared

Activity by Year

2015-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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1 shared paperBioinformatics

Dominik Luntzer

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3 papers

Recent·Most cited

AnchoRNA: Full virus genome alignments through conserved anchor regions

Tom Eulenfeld, Sandra Triebel, Peter F Stadler, Manja Marz

AnchoRNA improves full-genome alignment of viral sequences by identifying conserved anchor regions, enhancing alignment accuracy and efficiency.

bioRxiv · Jan 30, 2025 · PreprintBioinformatics

SHAPE directed RNA folding

Dominik Luntzer, Ronny Lorenz, Ivo L Hofacker, Peter F Stadler, Michael T. Wolfinger

The paper introduces a method for RNA structure prediction using SHAPE reactivities integrated with thermodynamics-based algorithms in the viennaRNA Package.

Bioinformatics · Sep 9, 2015Peer-reviewedBioinformatics

Disturbance of poised chromatin coincides with increased expression of developmental genes in cancer

Stephan H Bernhart, Helene Kretzmer, Frank Jühling, Peter F Stadler, Steve Hoffmann

The paper shows that hypermethylation of poised chromatin and up-regulation of corresponding developmental genes is a common feature in cancer, using large-scale expression and methylation data.

bioRxiv · Mar 29, 2015 · PreprintCancer Biology