Author

Philipp Rescheneder

University of Vienna

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Genetic & Genomic Medicine· 1 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:variant calling· 4 Organism:human· 3 Assay:long-read sequencing· 3 Assay:whole-genome sequencing· 3 Approach:experimental assay· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1

Frequent Co-Authors

Arndt von HaeseleriD· 3 shared Fritz Joachim SedlazeckiD· 2 shared Han FangiD· 2 shared Maria NattestadiD· 2 shared Michael C. SchatziD· 2 shared Moritz SmolkaiD· 2 shared Alexey ZabelkiniD· 1 shared Angela L MilleriD· 1 shared

Activity by Year

2015-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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3 shared papersBioinformatics

Arndt von HaeselerORCID

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Accurate repeat expansion genotyping from whole-genome and real-time targeted nanopore sequencing with Mahi-mahi

Sophia B Gibson, Rebecca N Palmer, Sebastian Hollizeck, Wouter Koole, Heather M. Jeffery, Mirjan Albring, Jillian G. Buchan, R. Keira Cheetham, Martin Elferink, Joy Goffena, Elizabeth J. Hamlin, Rumo Jansen, Paul J. Lockhart, Dr. Rachel Martin, Angela L Miller, , Philipp Rescheneder

Mahi-mahi accurately genotypes repeat expansions from nanopore sequencing data, matching orthogonal methods and identifying pathogenic alleles.

medRxiv · Oct 20, 2026 · PreprintGenetic & Genomic Medicine

Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line

Maria Nattestad, Sara Goodwin, Karen Ng, Timour Baslan, Fritz Joachim Sedlazeck, Philipp Rescheneder, Tyler H. Garvin, Han Fang, James Gurtowski, Elizabeth Hutton, Elizabeth Tseng, Chen-Shan Chin, Tim Beck, Yogi Sundaravadanam, Melissa Kramer, , Michael C. Schatz

The paper uses long-read sequencing to analyze structural variations in the SK-BR-3 breast cancer cell line, revealing complex rearrangements and novel gene fusions.

Genome Research · Aug 1, 2018Peer-reviewedGenomics

Accurate detection of complex structural variations using single molecule sequencing

Fritz Joachim Sedlazeck, Philipp Rescheneder, Moritz Smolka, Han Fang, Maria Nattestad, Arndt von Haeseler, Michael C. Schatz

The paper introduces open-source tools for detecting structural variations using long-read sequencing, achieving high sensitivity and precision in complex regions and identifying novel variants in human genomes.

Nature Methods · Apr 27, 2018Peer-reviewedBioinformatics

Thiol-linked alkylation for the metabolic sequencing of RNA

Veronika A. Herzog, Brian Reichholf, Tobias Neumann, Philipp Rescheneder, Pooja Bhat, Thomas Rainer Burkard, Wiebke Wlotzka, Arndt von Haeseler, Johannes A. Zuber, Stefan Ludwig Ameres

SLAM-seq enables RNA polymerase II-dependent gene expression dynamics analysis by detecting 4-thiouridine incorporation at single-nucleotide resolution in mouse embryonic stem cells.

Nature Methods · Sep 25, 2017Peer-reviewedMolecular Biology

Teaser: Individualized benchmarking and optimization of read mapping results for NGS data

Moritz Smolka, Philipp Rescheneder, Michael C Schatz, Arndt von Haeseler, Fritz J Sedlazeck

Teaser benchmarks and optimizes read mapping parameters for NGS data, showing how Bowtie2 can be tailored for different datasets.

bioRxiv · Sep 1, 2015Bioinformatics