Kmer-Node2Vec: a Fast and Efficient Method for Kmer Embedding from the Kmer Co-occurrence Graph, with Applications to DNA Sequences
Zhaochong Yu, Zihang Yang, Qingyang Lan, Yuchuan Wang, Feijuan Huang, Yuanzhe Cai
The paper introduces Kmer-Node2Vec, a fast graph-based method for kmer embedding in DNA sequences, achieving faster training times than DNA2Vec while maintaining comparable accuracy.
Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) · Jul 24, 2023Peer-reviewedBioinformatics