Author

Rie Koide

RIKEN

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genetics· 2

Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:GWAS / association mapping· 1

Frequent Co-Authors

Anselmo Jiro KamadaiD· 2 shared Chikashi C. TeraoiD· 2 shared Nicholas F. ParrishiD· 2 shared Yoichiro KamataniiD· 2 shared Yukihide MomozawaiD· 2 shared Amr AswadiD· 1 shared Asami F. Gelinas· 1 shared Atsushi Takeda· 1 shared

Activity by Year

2020-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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2 shared papersGenetics

Anselmo Jiro KamadaORCID

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2 papers

Recent·Most cited

Mobile elements in human population-specific genome and phenotype divergence

Shohei Kojima, Satoshi Koyama, Mirei Ka, Yuka Saito, Erica H. Parrish, Mikiko Endo, Sadaaki Takata, Misaki Mizukoshi, Keiko Hikino, Atsushi Takeda, Asami F. Gelinas, Steven M. Heaton, Rie Koide, Anselmo Jiro Kamada, Michiya Noguchi, , Nicholas F. Parrish

The paper develops a tool to genotype mobile element variants (MEVs) using short-read data and identifies population-specific MEs linked to disease and gene regulation.

bioRxiv · Mar 25, 2022 · PreprintGenetics

Endogenization and excision of human herpesvirus 6 in human genomes

Xiaoxi Liu, Shunichi Kosugi, Rie Koide, Yoshiki Kawamura, Jumpei Ito, Hiroki Miura, Nana Matoba, Motomichi Matsuzaki, Masashi Fujita, Anselmo Jiro Kamada, Hidewaki Nakagawa, Gen Tamiya, Koichi Matsuda, Yoshinori Murakami, Michiaki Kubo, , Yoichiro Kamatani

The paper analyzes HHV-6 integration in human genomes, identifies co-evolution with chr22q, and reports evidence of in vivo excision and reactivation.

PLoS Genetics · Aug 10, 2020Peer-reviewedGenetics