Integrated genotyping, annotation and epigenetic characterization of transposable elements with GraffiTE
Clément Goubert, Rose Laflamme, Robert Eveleigh, Ioannis Ragoussis, Travis Wheeler, Guillaume Lettre, Guillaume Bourque, Cristian Groza
GraffiTE v1.1 is a Nextflow pipeline that genotypes structural variants, annotates polymorphic mobile elements, and maps epigenetic data to transposable elements using pangenome graphs, revealing hypomethylated elements and age-related demethylation.
bioRxiv · Nov 9, 2026 · PreprintBioinformatics