Author

Ruth Davidson

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Biology Disciplines

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Genomics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:statistical model· 2

Frequent Co-Authors

Siavash MirarabiD· 2 shared Tandy WarnowiD· 2 shared Ashu Gupta· 1 shared Jed Chou· 1 shared Mike Nute· 1 shared Pranjal Vachaspati· 1 shared Shashank Yaduvanshi· 1 shared

Activity by Year

2015-2015 · peak 2/yr

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7 top collaborators · 17 mutual co-author links

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2 shared papersGenomics

Siavash MirarabORCID

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2 papers

Recent·Most cited

A comparative study of SVDquartets and other coalescent-based species tree estimation methods

Jed Chou, Ashu Gupta, Shashank Yaduvanshi, Ruth Davidson, Mike Nute, Siavash Mirarab, Tandy Warnow

This paper compares SVDquartets with ASTRAL-2, NJst, and concatenation for species tree estimation under varying ILS, finding ASTRAL-2 most accurate under high ILS, concatenation under low ILS, and SVDquartets competitive with short gene sequences.

BMC Genomics · Oct 2, 2015Peer-reviewedGenomics

Phylogenomic species tree estimation in the presence of incomplete lineage sorting and horizontal gene transfer

Ruth Davidson, Pranjal Vachaspati, Siavash Mirarab, Tandy Warnow

This study evaluates quartet-based species tree methods for datasets with both incomplete lineage sorting and horizontal gene transfer, finding they are highly accurate even with high HGT rates.

bioRxiv · Jul 23, 2015Genomics